I am going to venture a guess and say that cckyle had it right. The squib was to close to allow the next round to chamber completely and the bullet was smashing into it. That would explain the factory round being smashed in. If there are no primer strikes, then it wasn't chambered correctly/completely, and that in turn saved at the very least, your weapon, and maybe even yourself.
When I reloaded my first 100 .223, I checked EVERY measurement on EVERY case/completed round. If it wasn't spot on, it wasn't used, or it was fixed...
Glad everything worked out for you, and you have all your parts intact!